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PYMOL TUTORIAL BOOKS DOWNLOAD
This will download the structure from the PDB web site and the protein will appear in the main portion of the screen. Actions can be performed on the entire protein (3KOI) or on the selection (‘sele’).
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Part of the sequence is selected (highlighted both in the sequence and in the molecule). The sequence of the protein is turned on (by pressing the “S” sequence button on the bottom right). PyMOL displaying a protein in ‘line’ visualization. Typing a command in the command box can perform many of the functions.įig 1.1.
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In the search box at the top of the page you can type the name of any protein you like in the search box, or you can use the “PDB code”, a code of four alphanumeric characters that defines a structure.Go to the PDB website (link opens in a new tab): Protein Data Bank.
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PART 1: GETTING FAMILIAR WITH PROTEIN STRUCTURE (45 min) Ideally, this lab can be completed in about three hours. NOTE: The times in parentheses are approximate suggestions of how much time it should take to complete the tasks.